Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014635.1 Corchorus capsularis cultivar CVL-1 contig14656, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28365

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
690--718
14
2.1
14
100
0
58
34
6
0
58
1.25
754--895
72
2.0
68
90
5
221
42
10
11
35
1.75
2469--2520
26
2.0
26
84
0
68
38
15
3
42
1.65
4468--4791
160
2.0
164
90
4
521
39
24
12
24
1.89
8842--9044
101
2.0
101
100
0
406
41
7
22
27
1.81
13052--13095
22
1.9
24
86
9
65
29
25
6
38
1.81
14523--14597
31
2.4
31
84
0
96
24
13
25
37
1.91
15454--15717
130
2.0
131
84
3
345
33
9
27
29
1.88
15816--15843
5
5.6
5
100
0
56
82
0
17
0
0.68
23896--23954
31
1.9
31
82
6
75
30
27
8
33
1.86
25057--25134
29
2.6
31
83
6
106
28
12
29
29
1.93
25492--25521
13
2.3
13
94
0
51
36
0
33
30
1.58

Tables:   1

The End!