Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014638.1 Corchorus capsularis cultivar CVL-1 contig14659, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11074
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30


Found at i:9896 original size:17 final size:17

Alignment explanation


    Indices: 9874--9909  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       9864 TGAGAACAAT

                        *    
       9874 TTTTCTCCTTCTTCATA
          1 TTTTCTCCTTCTCCATA

                  *          
       9891 TTTTCTTCTTCTCCATA
          1 TTTTCTCCTTCTCCATA

              
       9908 TT
          1 TT

       9910 CTATTGTCTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.11, C:0.28, G:0.00, T:0.61


Consensus pattern (17 bp):   
TTTTCTCCTTCTCCATA

Found at i:11057 original size:2 final size:2

Alignment explanation


    Indices: 11050--11074  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

      11040 TATAATTGAC

                                                 
      11050 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.