Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001464.1 Corchorus capsularis cultivar CVL-1 contig01464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6223
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37


Found at i:171 original size:2 final size:2

Alignment explanation


    Indices: 164--198  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

        154 TCTTATTTCT

                                                                
        164 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        199 CACATGCTCA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:5493 original size:2 final size:2

Alignment explanation


    Indices: 5486--5521  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       5476 CCTTTTGGAG

                                                                 
       5486 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       5522 GTATGTATGT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.