Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014640.1 Corchorus capsularis cultivar CVL-1 contig14661, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65494

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6581--6606
2
13.0
2
100
0
52
50
0
0
50
1.00
7134--7218
32
2.7
30
79
15
91
38
16
17
27
1.91
7558--7591
2
16.5
2
93
6
59
50
0
2
47
1.16
7608--7639
3
11.0
3
93
6
57
65
0
0
34
0.93
11207--11253
22
2.1
22
92
0
76
42
2
6
48
1.40
11396--11431
11
3.3
11
92
7
56
44
2
5
47
1.41
11218--11772
178
3.0
178
87
10
772
39
6
20
33
1.79
11596--11631
11
3.3
11
92
7
56
44
2
5
47
1.41
11396--11783
202
1.9
199
91
4
636
40
6
19
33
1.78
13018--13946
437
2.1
439
93
1
1574
28
12
15
43
1.84
17549--17587
10
3.9
10
83
9
53
87
7
5
0
0.68
17549--17586
20
1.9
20
89
10
60
86
7
5
0
0.69
19324--19393
29
2.4
29
82
2
86
38
27
11
22
1.89
21197--21238
12
3.5
12
83
9
50
76
0
23
0
0.79
21288--21325
13
2.8
14
88
8
60
0
23
0
76
0.79
27356--27385
15
2.1
14
93
6
51
33
0
0
66
0.92
28579--28640
33
1.9
32
86
3
88
17
3
20
58
1.53
28872--28937
33
2.0
33
93
0
114
22
22
21
33
1.97
29115--29141
2
13.5
2
100
0
54
48
0
0
51
1.00
30123--30181
31
1.9
31
92
0
100
35
23
11
28
1.91
30652--30773
61
2.0
61
98
0
235
27
31
14
25
1.95
36855--36994
72
2.0
71
94
1
244
25
20
22
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37472--37506
1
35.0
1
88
0
52
94
0
5
0
0.32
45895--45938
12
3.7
12
87
0
61
18
2
59
20
1.49
45895--45945
12
4.2
12
84
0
57
19
3
54
21
1.60
46675--46760
42
2.0
42
97
0
163
43
15
22
19
1.88
51741--51831
12
7.7
12
74
12
64
51
1
46
1
1.15
51766--51855
36
2.5
36
83
3
110
50
3
45
1
1.25
51750--51827
3
26.0
3
78
0
66
53
1
44
0
1.08
59682--59718
19
1.9
19
89
10
58
21
21
8
48
1.76
63684--63714
15
2.1
14
94
5
53
90
0
0
9
0.46

Tables:   1

The End!