Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014643.1 Corchorus capsularis cultivar CVL-1 contig14664, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66097

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4207--4283
40
1.9
40
94
0
136
31
14
6
48
1.69
4988--5090
30
3.3
29
77
8
89
16
8
34
39
1.80
5008--5060
16
3.4
15
75
15
54
11
7
41
39
1.69
4988--5091
31
3.4
30
81
7
102
16
8
35
39
1.79
5011--5088
16
4.9
16
73
3
50
16
7
34
41
1.77
5277--5376
16
6.2
16
76
4
94
6
10
30
54
1.58
5280--5364
32
2.7
32
88
0
125
7
10
27
55
1.60
7452--7492
21
2.0
21
100
0
82
34
14
7
43
1.73
8935--9404
156
3.0
156
98
0
904
39
18
12
28
1.88
14386--14428
21
2.0
21
100
0
86
41
18
30
9
1.82
14576--14653
36
2.2
36
85
0
102
26
24
21
26
1.99
15334--15358
2
12.5
2
100
0
50
52
48
0
0
1.00
16195--16226
10
3.2
10
100
0
64
28
59
12
0
1.34
30244--30294
21
2.4
22
74
9
52
54
3
0
41
1.19
30342--30374
6
5.7
6
96
3
59
0
12
0
87
0.53
32054--32102
24
2.0
24
96
0
89
40
30
0
28
1.57
44370--44518
73
2.0
73
98
0
289
38
19
16
25
1.92
44604--44650
23
2.0
23
100
0
94
34
17
21
27
1.95
51784--51873
31
2.9
31
88
3
128
48
3
17
30
1.63
52076--52165
31
2.9
31
88
3
128
48
3
17
30
1.63
51605--52189
292
2.0
292
98
0
1143
43
9
14
32
1.77
52311--52366
22
2.5
22
76
0
58
37
5
10
46
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52749--52797
22
2.2
22
85
7
64
28
14
4
53
1.59
52975--53059
23
3.7
23
82
1
100
38
15
5
40
1.71
52953--53061
22
4.9
22
78
6
94
36
16
8
38
1.79
52958--53059
45
2.3
46
84
3
127
38
15
7
38
1.77
53067--53107
21
1.9
22
85
5
57
24
19
9
46
1.80
53064--53203
22
6.4
22
78
11
128
31
15
9
43
1.78
52953--53203
44
5.8
42
74
11
188
34
15
8
41
1.79
55091--55133
17
2.6
16
85
10
59
34
20
23
20
1.96
63420--63448
9
3.2
9
100
0
58
34
0
20
44
1.52
64941--64979
19
2.1
19
85
4
53
48
7
5
38
1.54

Tables:   1

The End!