Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001465.1 Corchorus capsularis cultivar CVL-1 contig01465, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5583
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29


Found at i:5561 original size:1 final size:1

Alignment explanation


    Indices: 5555--5580  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

       5545 CATGATATTT

                                      
       5555 AAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAA

       5581 TTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.