Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014650.1 Corchorus capsularis cultivar CVL-1 contig14671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93320

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3132--3168
16
2.1
18
76
23
51
59
16
5
18
1.55
3137--3168
16
2.0
16
100
0
64
56
18
6
18
1.62
4431--4521
22
4.1
22
77
8
85
39
16
9
34
1.82
4549--4630
22
3.7
22
82
9
80
36
13
14
35
1.86
4592--4698
23
4.7
22
78
15
78
36
14
9
40
1.78
4592--4700
22
4.9
22
77
10
87
35
14
9
40
1.78
4706--4880
22
8.0
22
71
7
77
33
17
9
40
1.81
5026--5155
22
5.9
22
84
5
129
35
16
13
34
1.88
5026--5157
44
3.0
43
79
7
149
35
17
12
34
1.88
5026--5156
66
2.0
66
80
5
149
35
17
12
34
1.88
5321--5358
19
2.0
20
85
15
53
60
2
5
31
1.33
5665--5729
31
2.1
31
83
11
80
49
4
18
27
1.67
5948--6075
63
2.0
63
98
0
247
43
21
11
23
1.85
6385--6621
78
3.2
78
84
7
289
51
0
11
36
1.45
6467--6621
70
2.2
70
86
4
206
52
0
10
36
1.42
8295--8864
60
9.7
60
70
12
191
38
16
24
20
1.93
8351--8522
57
3.0
56
73
8
164
38
15
24
20
1.92
8305--8618
117
2.7
117
82
1
360
38
16
23
20
1.93
8422--8851
177
2.4
177
85
2
546
37
17
25
20
1.93
8575--8851
117
2.4
116
80
3
322
37
16
25
19
1.93
8359--8863
60
8.6
57
74
7
252
38
16
25
20
1.92
8299--8856
294
1.9
293
81
2
679
38
16
25
20
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11344--11375
2
15.5
2
93
6
55
46
3
0
50
1.17
13527--13554
14
2.0
14
100
0
56
42
21
21
14
1.88
13706--13742
15
2.4
16
86
9
58
37
21
16
24
1.93
24512--24556
3
15.0
3
85
0
54
4
33
0
62
1.15
24514--24590
12
6.7
12
75
8
61
2
40
0
57
1.13
35091--35118
2
14.0
2
100
0
56
50
0
50
0
1.00
44639--44677
20
2.0
20
85
10
53
46
5
0
48
1.24
52723--52825
54
1.9
54
93
0
179
19
34
17
28
1.94
55600--55625
2
13.0
2
100
0
52
50
0
0
50
1.00
55838--55869
2
16.0
2
100
0
64
50
0
0
50
1.00
56155--56212
30
1.9
30
86
10
82
32
13
1
51
1.51
57608--57670
7
10.1
7
75
25
70
0
15
31
52
1.44
57609--57669
12
5.1
12
100
0
122
0
16
32
50
1.45
58308--58332
2
12.5
2
100
0
50
48
0
0
52
1.00
58983--59088
22
4.8
21
74
11
70
33
10
18
36
1.85
59199--59370
66
2.6
66
81
3
195
40
9
14
35
1.78
59154--59370
22
9.7
22
69
11
120
41
9
13
35
1.77
60686--60720
3
11.7
3
100
0
70
34
0
0
65
0.93
63185--63220
7
5.3
7
86
6
56
52
0
0
47
1.00
63180--63221
20
2.2
19
95
4
75
47
0
0
52
1.00
78554--78608
12
4.5
12
86
4
83
32
14
25
27
1.95
78558--78605
25
2.0
24
91
4
78
33
12
27
27
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80032--80066
18
1.9
18
88
0
52
37
8
17
37
1.80
91016--91082
32
2.2
29
89
7
98
55
4
11
28
1.56
92159--92228
27
2.7
24
75
18
68
55
11
2
30
1.50
92166--92227
28
2.2
28
80
11
74
58
11
3
27
1.48
92629--92656
3
9.3
3
100
0
56
35
0
0
64
0.94

Tables:   1

The End!