Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014651.1 Corchorus capsularis cultivar CVL-1 contig14672, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14185
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--32  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

                                                           
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

         33 GTAATGAAGT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:3092 original size:18 final size:18

Alignment explanation


    Indices: 3069--3162  Score: 125
    Period size: 18  Copynumber: 5.2  Consensus size: 18

       3059 GGAATACAAT

                    *     *   
       3069 CTGTGTTCAGTGCTAGGA
          1 CTGTGTTCGGTGCTGGGA

                              
       3087 CTGTGTTCGGTGCTGGGA
          1 CTGTGTTCGGTGCTGGGA

                *  *          
       3105 CTGTATTTGGTGCTGGGA
          1 CTGTGTTCGGTGCTGGGA

                          *   
       3123 CTGTGTTCGGTGCTAGGA
          1 CTGTGTTCGGTGCTGGGA

            *   *             
       3141 TTGTATTCGGTGCTGGGA
          1 CTGTGTTCGGTGCTGGGA

                
       3159 CTGT
          1 CTGT

       3163 ATTAGCAGGT


Statistics
Matches: 65,  Mismatches: 11, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   65  1.00

ACGTcount: A:0.11, C:0.15, G:0.38, T:0.36


Consensus pattern (18 bp):   
CTGTGTTCGGTGCTGGGA

Done.