Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014654.1 Corchorus capsularis cultivar CVL-1 contig14675, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5746
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41


Found at i:923 original size:17 final size:18

Alignment explanation


    Indices: 889--928  Score: 73
    Period size: 17  Copynumber: 2.3  Consensus size: 18

        879 TCTGATCCAC

                              
        889 GGGATAGGAACTTTTTTT
          1 GGGATAGGAACTTTTTTT

                              
        907 GGGATAGGAAC-TTTTTT
          1 GGGATAGGAACTTTTTTT

                 
        924 GGGAT
          1 GGGAT

        929 CTGTGTCCTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  17   11  0.50
  18   11  0.50

ACGTcount: A:0.23, C:0.05, G:0.33, T:0.40


Consensus pattern (18 bp):   
GGGATAGGAACTTTTTTT
Done.