Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014658.1 Corchorus capsularis cultivar CVL-1 contig14679, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55920

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
416--530
54
2.1
53
88
4
167
48
7
18
25
1.74
844--891
22
2.2
22
84
0
60
54
4
18
22
1.61
933--1092
43
3.7
42
76
10
137
56
8
20
15
1.63
923--1094
22
8.0
21
73
10
125
56
7
19
15
1.63
1124--1176
21
2.4
21
87
6
70
58
3
16
20
1.54
1150--1197
14
3.4
14
88
5
78
56
6
14
22
1.61
1172--1245
21
3.5
20
73
12
51
50
9
20
20
1.76
1318--1382
27
2.4
28
79
5
89
61
0
21
16
1.34
4005--4236
70
3.2
70
84
10
304
37
12
0
49
1.48
4005--4243
78
3.2
77
88
7
341
37
12
0
49
1.47
5590--5632
6
7.2
6
91
0
59
11
2
20
65
1.36
6205--6402
103
2.0
99
92
4
333
38
12
0
48
1.44
7839--7880
22
1.9
22
85
0
57
11
19
28
40
1.87
9664--9701
11
3.5
11
89
10
51
39
0
2
57
1.12
11668--11741
34
2.2
33
76
11
80
14
31
41
12
1.83
11760--11920
66
2.4
63
80
11
180
11
38
36
14
1.82
11794--11922
33
3.9
33
89
4
188
12
40
34
13
1.82
11986--12102
32
3.6
32
90
1
171
11
29
43
15
1.82
12414--12456
12
3.7
11
84
6
50
67
2
2
27
1.15
12583--12675
11
7.1
14
65
22
58
33
2
8
55
1.42
12614--12681
26
2.6
26
86
9
102
33
1
10
54
1.43
12691--12749
25
2.4
25
91
5
95
42
0
22
35
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15736--15777
18
2.3
19
88
8
61
52
19
11
16
1.74
17648--17809
83
2.0
80
85
6
218
48
10
6
33
1.64
19722--19765
21
2.0
21
86
4
61
81
2
15
0
0.78
19722--19757
11
3.3
11
88
0
54
83
0
16
0
0.65
19772--19802
16
1.9
16
93
0
53
54
3
3
38
1.32
31625--31924
156
1.9
156
86
2
433
30
15
19
35
1.93
31826--32116
147
2.0
145
78
8
302
30
14
21
34
1.92
35937--35989
26
2.0
27
92
3
90
67
7
5
18
1.35
35939--36001
26
2.4
25
77
12
65
66
11
4
17
1.39
46552--46582
2
15.5
2
93
0
53
51
3
0
45
1.17
49690--49728
2
19.5
2
94
0
69
53
0
0
46
1.00
51050--51087
16
2.4
16
95
0
67
15
44
23
15
1.85
54636--54665
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!