Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014663.1 Corchorus capsularis cultivar CVL-1 contig14684, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94326

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5145--5416
136
2.0
136
91
0
445
42
14
9
33
1.77
8173--8569
211
1.9
211
94
0
704
32
13
27
25
1.93
9437--9505
34
2.0
35
85
2
95
15
13
8
62
1.54
12626--12678
27
2.0
27
85
7
74
39
9
1
49
1.46
13715--13780
31
2.1
31
83
10
82
30
16
4
48
1.66
15209--15245
19
1.9
19
89
10
58
29
5
0
64
1.15
15409--15491
22
4.0
22
68
17
70
31
9
18
40
1.82
15460--15549
22
4.0
23
75
12
71
31
7
18
42
1.79
15582--15971
22
17.7
22
70
12
158
40
9
15
34
1.79
15718--15926
109
1.9
109
81
13
252
41
9
14
34
1.78
16047--16084
20
1.9
20
94
0
67
42
13
21
23
1.88
15913--16473
248
2.2
247
85
7
662
40
8
17
33
1.80
16075--16174
44
2.3
43
82
6
112
42
11
11
36
1.76
16075--16214
22
6.4
22
71
12
92
42
9
12
35
1.75
16300--16366
19
3.5
19
93
2
107
43
10
22
23
1.84
16381--16630
22
11.6
22
65
18
64
40
9
16
34
1.80
16526--16807
22
12.7
23
72
7
138
34
10
15
38
1.83
16526--16807
44
6.3
45
75
8
163
34
10
15
38
1.83
16724--16896
22
7.9
22
67
14
88
39
9
15
35
1.80
21425--21501
39
2.0
39
89
5
120
41
6
32
19
1.77
21991--22211
121
1.8
121
89
1
345
20
28
28
22
1.98
34172--35471
647
2.0
648
91
2
2112
27
11
25
35
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37352--37397
16
2.9
16
83
9
58
54
0
8
36
1.32
38852--38919
33
2.1
33
97
0
127
20
11
22
45
1.83
42172--42213
21
2.0
21
90
0
66
26
21
11
40
1.88
45902--45937
16
2.2
16
95
0
63
69
2
27
0
1.02
47522--47548
12
2.2
12
100
0
54
33
25
0
40
1.56
47985--48041
29
2.0
29
89
0
87
35
5
15
43
1.70
52401--52567
88
1.9
87
92
1
280
37
11
13
37
1.81
67990--68054
29
2.2
29
86
5
87
43
27
10
18
1.83
69194--69218
7
3.6
7
100
0
50
32
16
28
24
1.96
77906--77931
12
2.2
12
100
0
52
57
19
7
15
1.62
80309--80451
53
2.7
53
98
0
277
40
11
7
39
1.71
81769--81922
81
1.9
82
82
6
195
38
19
12
28
1.89
89962--90240
147
1.9
147
97
0
531
35
17
13
33
1.89
90837--90891
3
17.7
3
94
3
92
65
0
1
32
1.03
90849--90907
9
6.1
11
94
4
53
59
0
0
40
0.97
91867--92158
146
2.0
149
97
2
563
51
3
7
38
1.46
92055--92308
137
1.8
138
85
5
361
47
1
11
38
1.52

Tables:   1

The End!