Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014665.1 Corchorus capsularis cultivar CVL-1 contig14686, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17724
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Found at i:9251 original size:48 final size:45

Alignment explanation


    Indices: 9170--9265  Score: 147
    Period size: 48  Copynumber: 2.1  Consensus size: 45

       9160 TATTGACCCC

                  *                                      
       9170 ATAAAACATTGGCTATTTCACATATCTTATATTTAAACTATATTT
          1 ATAAAAAATTGGCTATTTCACATATCTTATATTTAAACTATATTT

                                      *                     
       9215 ATAAAAAATTTGGCTATTTTCACATTTTCTTATATTTAAACTATATTT
          1 ATAAAAAA-TTGGCTA-TTTCACA-TATCTTATATTTAAACTATATTT

               
       9263 ATA
          1 ATA

       9266 TCTTATCCTC


Statistics
Matches: 46,  Mismatches: 2, Indels: 3
        0.90            0.04        0.06

Matches are distributed among these distances:
  45    7  0.15
  46    7  0.15
  47    7  0.15
  48   25  0.54

ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47


Consensus pattern (45 bp):   
ATAAAAAATTGGCTATTTCACATATCTTATATTTAAACTATATTT

Found at i:11222 original size:10 final size:10

Alignment explanation


    Indices: 11207--11232  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

      11197 TTTAAGTTCA

                      
      11207 TAAACTATAG
          1 TAAACTATAG

                      
      11217 TAAACTATAG
          1 TAAACTATAG

                  
      11227 TAAACT
          1 TAAACT

      11233 TATTTGCACC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.50, C:0.12, G:0.08, T:0.31


Consensus pattern (10 bp):   
TAAACTATAG
Done.