Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014668.1 Corchorus capsularis cultivar CVL-1 contig14689, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49817

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72--207
31
4.5
31
74
10
136
25
18
17
38
1.92
136--236
29
3.4
29
66
15
89
27
20
18
32
1.96
105--268
60
2.7
61
89
4
262
25
19
18
35
1.95
484--558
22
3.2
24
65
16
66
32
18
5
44
1.72
474--567
46
2.0
47
97
2
181
31
18
6
43
1.75
3950--4006
23
2.5
23
100
0
114
29
38
5
26
1.78
6532--6625
32
3.1
31
76
20
117
28
35
18
18
1.94
6532--6616
27
2.9
27
81
15
91
28
35
18
17
1.94
6848--6944
47
2.1
47
96
0
176
21
38
17
22
1.93
10314--10368
23
2.4
23
96
0
101
47
18
12
21
1.82
13347--13381
13
2.7
13
95
0
61
60
8
11
20
1.57
36183--36245
29
2.2
29
85
0
81
33
14
7
44
1.74
37997--38033
19
1.9
19
94
0
65
43
16
18
21
1.88
38681--38726
18
2.6
19
83
10
62
67
0
0
32
0.91
39533--39616
28
3.0
28
91
3
116
39
3
15
41
1.64
39658--39698
5
8.4
5
89
5
66
58
0
17
24
1.38
40612--40759
65
2.3
67
80
9
162
41
10
12
35
1.77
40789--40848
24
2.5
24
86
2
77
33
11
21
33
1.90
40810--41084
44
6.3
44
69
15
153
32
9
18
39
1.83
40591--41079
22
22.4
22
65
16
124
35
10
17
36
1.84
47224--47836
130
4.7
130
87
3
757
34
14
12
37
1.85
49641--49691
2
25.5
2
95
0
93
50
0
1
47
1.12

Tables:   1

The End!