Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014675.1 Corchorus capsularis cultivar CVL-1 contig14696, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8638

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5285--5350
34
2.0
33
90
3
105
39
9
13
37
1.77
5325--5362
13
2.9
13
92
0
67
42
7
7
42
1.63
5361--5420
3
20.7
3
89
6
97
71
0
0
28
0.86
6083--6112
8
3.8
8
90
0
51
76
0
10
13
1.01
7126--7227
24
4.4
23
78
14
111
26
20
2
50
1.63
7102--7203
45
2.3
45
84
3
125
27
21
2
48
1.65
7126--7228
8
13.2
8
73
11
81
26
21
2
49
1.63
7344--7392
14
3.4
14
83
11
55
28
16
4
51
1.63
7382--7436
22
2.5
22
81
0
65
34
23
1
40
1.66
7402--7445
14
2.9
15
87
9
63
31
25
2
40
1.68
7396--7446
16
3.3
16
83
10
70
31
25
1
41
1.67
7474--7688
14
15.1
13
65
25
55
29
23
5
41
1.76
7473--7534
22
2.7
22
90
5
88
29
24
3
43
1.70
7526--7574
22
2.2
22
85
7
64
30
30
2
36
1.69
7264--7586
159
2.0
158
82
7
386
28
23
6
41
1.78
7492--7610
36
3.3
36
85
0
148
30
26
5
38
1.77
7574--7658
22
3.7
22
76
13
73
27
22
7
43
1.79
7882--7942
6
9.2
6
73
19
50
27
21
3
47
1.66
7851--7942
26
3.2
28
81
10
80
28
22
3
45
1.68
7881--7972
14
6.6
14
69
22
52
26
22
3
47
1.66
7851--7972
22
5.9
21
73
18
87
27
22
3
46
1.67

Tables:   1

The End!