Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014683.1 Corchorus capsularis cultivar CVL-1 contig14704, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91642

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
855--899
13
3.5
13
90
3
74
22
13
8
55
1.65
896--928
6
5.5
6
100
0
66
30
0
15
54
1.41
6760--6951
102
1.9
98
85
8
262
40
27
13
18
1.88
12273--12458
93
2.0
93
98
0
363
33
18
9
38
1.84
21789--21828
18
2.2
18
86
4
53
45
5
20
30
1.72
26933--26957
10
2.5
10
100
0
50
48
20
8
24
1.76
27892--27924
6
5.5
6
100
0
66
30
0
15
54
1.41
32483--32529
24
2.0
25
87
8
71
21
4
19
55
1.60
45883--46278
197
2.0
196
93
1
668
32
21
19
26
1.97
54311--54349
19
2.1
19
90
0
60
35
0
20
43
1.52
56366--56455
38
2.4
38
94
1
164
21
16
36
25
1.94
56459--56489
6
5.2
6
92
0
53
16
3
35
45
1.63
59618--59651
15
2.2
16
89
5
52
41
0
8
50
1.34
59849--60034
38
4.9
38
91
1
302
21
17
35
25
1.95
60038--60068
6
5.2
6
100
0
62
16
0
35
48
1.46
60296--60329
12
2.8
12
100
0
68
17
8
44
29
1.79
61722--61758
19
1.9
19
94
0
65
21
8
10
59
1.56
63857--63892
19
1.9
18
88
5
54
41
2
22
33
1.68
65169--65198
13
2.2
14
94
5
53
30
6
10
53
1.60
79695--82403
50
54.7
50
80
3
2636
16
27
17
38
1.91
79695--82403
100
27.3
100
81
3
2943
16
27
17
38
1.91
80049--80219
87
2.0
87
87
4
247
16
29
21
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80136--82403
249
9.1
248
83
3
2590
16
27
17
38
1.91
86985--87018
11
3.2
11
91
8
61
55
17
8
17
1.66
86985--87021
10
3.6
10
96
3
65
51
18
8
21
1.72
87878--87904
6
4.5
6
100
0
54
29
0
14
55
1.40
89820--89861
10
3.9
11
78
15
52
26
7
2
64
1.32
91356--91388
6
5.5
6
100
0
66
30
0
15
54
1.41

Tables:   1

The End!