Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014686.1 Corchorus capsularis cultivar CVL-1 contig14707, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42928

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7008--7035
14
2.0
14
100
0
56
57
0
42
0
0.99
10899--10965
33
2.0
33
100
0
134
26
40
17
14
1.89
16496--16574
39
2.0
39
92
0
131
27
16
17
37
1.91
16578--16635
30
1.9
30
96
0
107
39
18
18
22
1.92
19868--19900
2
16.5
2
100
0
66
48
0
0
51
1.00
24457--24482
13
2.0
13
100
0
52
46
7
38
7
1.61
24808--24872
31
2.1
31
97
0
121
20
13
23
43
1.87
26190--26345
87
1.8
83
86
5
213
37
11
13
37
1.81
35097--35162
31
2.1
31
88
5
98
27
19
4
48
1.68
35470--35512
19
2.1
21
84
16
56
27
6
2
62
1.33
35678--35761
22
3.8
23
73
9
68
34
9
16
39
1.81
35990--36217
22
10.5
22
71
13
125
42
9
14
33
1.78
36007--36107
21
4.6
22
72
17
84
43
9
13
32
1.78
36298--36675
22
17.7
21
70
11
117
42
9
14
33
1.78
36270--36397
64
2.0
66
81
6
154
40
9
13
36
1.77
36230--36854
44
14.5
42
69
14
216
39
9
15
35
1.81
36298--36569
107
2.5
108
90
5
412
43
10
13
32
1.78
36592--36676
23
3.7
23
84
1
100
41
7
14
37
1.73
36614--36717
46
2.3
45
81
6
113
39
9
13
37
1.77
36406--36715
128
2.4
126
78
3
316
42
9
14
33
1.78
36615--36717
23
4.6
22
82
8
82
39
9
13
36
1.78
36338--36728
22
18.1
22
70
13
134
40
9
15
34
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36660--36737
22
3.5
23
79
11
74
38
12
12
35
1.82
36818--36859
22
1.9
22
85
0
57
30
11
19
38
1.88

Tables:   1

The End!