genome.fa.s14688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014688.1 Corchorus capsularis cultivar CVL-1 contig14709, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126954

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9374--9411	18	2.1	18	100	0	76	31	15	10	42	1.81
22506--22548	13	3.3	13	75	12	52	34	11	9	44	1.73
22508--22561	26	2.0	26	85	3	72	40	11	7	40	1.69
29324--29373	16	3.2	16	66	11	50	16	20	8	56	1.65
29312--29383	30	2.4	30	100	0	144	11	19	11	58	1.62
31662--31717	24	2.3	24	90	0	85	17	5	55	21	1.62
35441--35486	23	2.0	23	100	0	92	30	17	26	26	1.97
35979--36007	13	2.2	13	100	0	58	0	41	6	51	1.28
38332--38397	31	2.1	32	88	5	100	28	18	4	48	1.67
38648--38831	22	8.3	22	75	11	108	34	9	18	37	1.84
38650--38824	44	4.0	43	78	9	140	35	10	17	37	1.83
38870--39257	22	17.5	22	69	13	123	40	10	15	34	1.81
39091--39279	44	4.3	44	78	8	183	43	9	12	34	1.74
39072--39259	66	2.8	66	78	7	166	44	9	13	33	1.75
39116--39279	88	1.9	88	85	5	233	43	10	12	32	1.77
39365--39429	19	3.4	19	84	2	67	43	12	20	24	1.86
39415--39566	22	6.9	22	77	7	121	41	9	13	35	1.77
39415--39606	44	4.4	44	74	7	140	42	9	14	33	1.78
39422--39545	66	1.9	66	84	3	169	39	9	12	37	1.77
39423--39581	66	2.4	65	80	8	160	42	9	13	34	1.77
42838--42937	52	1.9	53	85	2	139	36	27	20	17	1.94
61382--61406	2	12.5	2	100	0	50	52	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61453--61509	2	29.0	2	85	3	80	49	5	0	45	1.24
66533--66574	20	2.1	20	100	0	84	30	30	9	28	1.89
97442--97484	22	1.9	23	95	4	79	25	23	13	37	1.92
102190--102226	2	18.5	2	100	0	74	51	0	0	48	1.00
105410--105445	2	18.5	2	94	5	65	50	0	0	50	1.00
107789--107836	24	2.0	24	95	0	87	31	16	14	37	1.89
107839--107912	30	2.5	30	89	8	109	39	6	13	40	1.71
109967--109994	1	28.0	1	100	0	56	0	0	0	100	0.00
115659--115760	49	2.1	49	100	0	204	32	19	15	32	1.93
123124--123172	16	2.7	19	78	12	59	53	0	12	34	1.39

Tables:   1

The End!