Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014689.1 Corchorus capsularis cultivar CVL-1 contig14710, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100278

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6621--6690
29
2.4
29
80
7
79
21
15
17
45
1.85
9999--10035
17
2.2
17
90
9
58
2
8
0
89
0.58
10003--10033
14
2.1
15
94
5
55
3
6
0
90
0.55
10050--10314
107
2.5
107
96
0
478
40
8
9
41
1.67
14189--14217
2
14.5
2
100
0
58
48
0
0
51
1.00
24107--24131
13
1.9
13
100
0
50
0
12
0
88
0.53
24526--24572
18
2.7
17
78
15
51
42
2
2
53
1.25
31012--31041
2
15.0
2
92
0
51
50
3
0
46
1.18
32150--32227
33
2.4
32
89
4
111
35
5
39
19
1.74
39950--39998
23
2.1
23
96
0
89
26
24
12
36
1.91
43692--43725
11
3.1
11
91
0
50
67
11
20
0
1.21
44942--44984
22
2.0
22
85
0
59
37
13
6
41
1.72
45053--45098
23
2.0
23
87
4
67
32
10
4
52
1.56
45052--45101
22
2.3
21
83
10
64
30
14
4
52
1.59
45229--45288
22
2.7
22
75
14
61
35
11
15
38
1.83
45299--45378
23
3.5
23
84
1
99
38
13
6
41
1.70
45277--45378
46
2.2
45
82
5
116
36
13
8
41
1.76
45253--45523
22
12.5
22
71
13
145
35
15
9
40
1.79
46082--46176
38
2.5
37
78
6
111
50
10
24
14
1.74
46702--46767
31
2.1
31
88
5
98
48
4
19
27
1.68
49194--49271
40
2.0
40
92
0
129
26
15
15
42
1.87
78198--78475
111
2.5
111
86
1
369
21
19
15
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80862--80887
7
3.7
7
100
0
52
57
42
0
0
0.98

Tables:   1

The End!