Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001469.1 Corchorus capsularis cultivar CVL-1 contig01469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5418
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38


Found at i:3401 original size:19 final size:20

Alignment explanation


    Indices: 3379--3419  Score: 50
    Period size: 19  Copynumber: 2.1  Consensus size: 20

       3369 TATTATTTTC

                                 
       3379 AATTCTATT-TAATCTAT-TT
          1 AATTCTATTGT-ATCTATCTT

                *               
       3398 AATTTTATTGTATCTATCTT
          1 AATTCTATTGTATCTATCTT

              
       3418 AA
          1 AA

       3420 ACTTATACAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 3
        0.83            0.04        0.13

Matches are distributed among these distances:
  19   14  0.74
  20    5  0.26

ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56


Consensus pattern (20 bp):   
AATTCTATTGTATCTATCTT

Found at i:3842 original size:24 final size:24

Alignment explanation


    Indices: 3808--3857  Score: 82
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       3798 CACAATGCTT

                               *    
       3808 TTGAATAATGTTTGCTAAATACTA
          1 TTGAATAATGTTTGCTAAACACTA

                  *                 
       3832 TTGAATGATGTTTGCTAAACACTA
          1 TTGAATAATGTTTGCTAAACACTA

              
       3856 TT
          1 TT

       3858 TTAACTTCTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42


Consensus pattern (24 bp):   
TTGAATAATGTTTGCTAAACACTA
Done.