Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014690.1 Corchorus capsularis cultivar CVL-1 contig14711, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33400

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2837--2951
59
1.9
61
87
3
171
30
13
16
40
1.86
3455--3508
26
2.1
26
83
16
69
44
11
9
35
1.72
11005--11050
23
2.0
23
100
0
92
39
13
13
34
1.83
13271--13318
20
2.5
18
78
21
53
39
4
6
50
1.47
16770--16819
26
2.0
25
88
4
73
38
6
2
54
1.37
21339--21506
81
2.1
81
94
0
291
33
7
26
32
1.84
22895--22932
18
2.1
18
100
0
76
18
15
21
44
1.86
24543--25169
313
2.0
313
99
0
1245
31
14
17
36
1.90
31257--31412
35
4.2
36
73
20
115
22
20
4
52
1.64
31292--31380
22
4.2
20
77
16
65
20
21
5
52
1.66
31252--31435
78
2.3
78
87
5
255
21
20
4
53
1.63
31371--31432
22
2.9
22
85
7
74
20
19
3
56
1.56
31466--31552
37
2.6
32
72
19
88
19
18
3
58
1.53
31547--31600
26
2.1
26
86
6
74
25
16
5
51
1.66
31553--31608
26
2.2
26
80
6
60
25
19
5
50
1.69
31587--31650
32
2.0
33
87
3
94
26
18
4
50
1.67
31692--31795
40
2.5
41
83
9
140
22
22
5
50
1.70

Tables:   1

The End!