Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014691.1 Corchorus capsularis cultivar CVL-1 contig14712, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 842

Length: 1404
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30


Found at i:478 original size:27 final size:27

Alignment explanation


    Indices: 448--499  Score: 86
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        438 CCCGAGTGTA

                          *            
        448 AAAATGACCAAAATGCCCCTGGGCGCG
          1 AAAATGACCAAAATACCCCTGGGCGCG

                              *      
        475 AAAATGACCAAAATACCCTTGGGCG
          1 AAAATGACCAAAATACCCCTGGGCG

        500 ACCCCAATGC


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  27   23  1.00

ACGTcount: A:0.37, C:0.27, G:0.23, T:0.13


Consensus pattern (27 bp):   
AAAATGACCAAAATACCCCTGGGCGCG
Done.