Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014692.1 Corchorus capsularis cultivar CVL-1 contig14713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5684
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:2589 original size:27 final size:27

Alignment explanation


    Indices: 2531--2610  Score: 88
    Period size: 27  Copynumber: 3.0  Consensus size: 27

       2521 GGTGAACTTA

                     *          * * * *
       2531 AAAAATGACTAAAATGCCCCCGAGTGT
          1 AAAAATGACCAAAATGCCCCTGGGCGC

                                       
       2558 AAAAATGACCAAAATGCCCCTGGGCGC
          1 AAAAATGACCAAAATGCCCCTGGGCGC

            *              *   *      
       2585 GAAAATGACCAAAATACCCTTGGGCG
          1 AAAAATGACCAAAATGCCCCTGGGCG

       2611 ACCCCAATGC


Statistics
Matches: 45,  Mismatches: 8, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  27   45  1.00

ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15


Consensus pattern (27 bp):   
AAAAATGACCAAAATGCCCCTGGGCGC
Done.