Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014693.1 Corchorus capsularis cultivar CVL-1 contig14714, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1875
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30


Found at i:161 original size:33 final size:33

Alignment explanation


    Indices: 119--217  Score: 180
    Period size: 33  Copynumber: 3.0  Consensus size: 33

        109 TATTATATTT

                                           * 
        119 TTGATGTGACAACTTCAGGTGCCACTAATATGC
          1 TTGATGTGACAACTTCAGGTGCCACTAATATAC

                                      *      
        152 TTGATGTGACAACTTCAGGTGCCACTTATATAC
          1 TTGATGTGACAACTTCAGGTGCCACTAATATAC

                                             
        185 TTGATGTGACAACTTCAGGTGCCACTAATATAC
          1 TTGATGTGACAACTTCAGGTGCCACTAATATAC

        218 AAGGTAGTAT


Statistics
Matches: 63,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  33   63  1.00

ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31


Consensus pattern (33 bp):   
TTGATGTGACAACTTCAGGTGCCACTAATATAC

Found at i:312 original size:32 final size:33

Alignment explanation


    Indices: 248--320  Score: 112
    Period size: 32  Copynumber: 2.2  Consensus size: 33

        238 ATAATTTTTA

                                  *          
        248 ATGATAAAAAAAGGTAGAAAGATGAGATTATGC
          1 ATGATAAAAAAAGGTAGAAAGAAGAGATTATGC

                    *                        
        281 ATGATAAAGAAAGGTAG-AAGAAGAGATTATGC
          1 ATGATAAAAAAAGGTAGAAAGAAGAGATTATGC

               *    
        313 ATGTTAAA
          1 ATGATAAA

        321 TAAACTTTGT


Statistics
Matches: 37,  Mismatches: 3, Indels: 1
        0.90            0.07        0.02

Matches are distributed among these distances:
  32   21  0.57
  33   16  0.43

ACGTcount: A:0.51, C:0.03, G:0.25, T:0.22


Consensus pattern (33 bp):   
ATGATAAAAAAAGGTAGAAAGAAGAGATTATGC
Done.