Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001470.1 Corchorus capsularis cultivar CVL-1 contig01470, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1227
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31


Found at i:214 original size:17 final size:17

Alignment explanation


    Indices: 191--234  Score: 79
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        181 AGTATCCGTT

                             
        191 CATTATATATGATAATA
          1 CATTATATATGATAATA

            *                
        208 TATTATATATGATAATA
          1 CATTATATATGATAATA

                      
        225 CATTATATAT
          1 CATTATATAT

        235 TATATATGAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  17   25  1.00

ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45


Consensus pattern (17 bp):   
CATTATATATGATAATA

Found at i:236 original size:24 final size:24

Alignment explanation


    Indices: 205--252  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        195 ATATATGATA

                                    
        205 ATATATTATATATGATAATACATT
          1 ATATATTATATATGATAATACATT

                                    
        229 ATATATTATATATGATAATACATT
          1 ATATATTATATATGATAATACATT

        253 TTCTTTTGAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46


Consensus pattern (24 bp):   
ATATATTATATATGATAATACATT
Done.