Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014704.1 Corchorus capsularis cultivar CVL-1 contig14725, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25003

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3004--3129
38
3.3
38
72
16
141
28
15
23
32
1.95
3158--3182
10
2.5
10
100
0
50
52
8
0
40
1.31
4808--4839
15
2.1
16
94
5
57
43
18
25
12
1.85
6781--6814
15
2.2
16
94
5
61
50
0
0
50
1.00
6835--6893
29
2.0
29
96
0
109
22
35
22
20
1.96
7189--7213
13
1.9
13
100
0
50
60
8
8
24
1.52
8910--8967
30
2.0
30
86
3
82
22
8
20
48
1.77
10883--10917
16
2.2
16
89
0
52
54
5
25
14
1.62
11134--11171
11
3.5
11
89
10
51
39
0
2
57
1.12
11376--11446
31
2.3
31
87
7
99
32
16
1
49
1.55
11722--11849
22
5.7
22
74
10
91
33
8
16
41
1.79
11723--11849
46
2.8
43
75
13
114
33
8
16
40
1.79
11813--11861
22
2.2
22
85
0
62
30
4
20
44
1.70
11900--12030
22
6.0
22
71
11
81
35
10
19
35
1.86
11925--12287
22
16.3
22
68
17
128
40
9
14
35
1.79
12042--12287
66
3.8
65
73
15
193
43
9
12
34
1.75
12399--12465
19
3.5
19
91
2
107
43
11
20
23
1.85
12456--12721
22
12.5
22
68
15
87
39
8
15
36
1.78
12598--12723
22
5.6
23
77
5
98
39
7
13
38
1.74
12688--12734
22
2.1
22
88
0
67
36
8
12
42
1.74
12774--12880
22
4.8
22
71
11
65
33
14
15
36
1.88
12772--12837
22
3.0
22
80
4
69
31
12
16
39
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17983--18026
21
2.1
21
86
0
61
25
59
9
6
1.53
19884--19923
18
2.2
19
90
4
64
50
5
0
45
1.23
21373--21412
19
2.1
19
95
0
71
40
17
0
42
1.49
21568--21610
20
2.1
21
86
4
61
48
20
9
20
1.77
24245--24365
42
2.9
42
96
0
215
36
12
19
31
1.89

Tables:   1

The End!