Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014706.1 Corchorus capsularis cultivar CVL-1 contig14727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67463

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1001--1090
46
2.0
46
86
0
126
31
26
12
30
1.92
1125--1238
41
2.8
41
78
6
115
39
7
10
42
1.66
11172--11255
5
17.8
5
78
7
61
2
20
2
75
1.03
14579--14624
16
2.9
16
90
0
65
0
15
47
36
1.45
14586--14624
4
9.8
4
88
0
51
0
17
48
33
1.48
17547--17586
19
2.1
19
100
0
80
25
5
25
45
1.73
26703--26762
31
1.9
31
86
0
84
48
13
16
21
1.80
27348--27422
37
2.0
37
89
5
116
13
22
33
30
1.92
30974--31183
116
1.8
116
90
0
339
36
13
14
35
1.86
33750--33788
2
19.5
2
89
10
62
46
2
0
51
1.14
33747--33791
10
4.7
9
89
10
63
44
2
0
53
1.13
35486--37091
438
3.7
435
83
4
1607
43
13
13
29
1.82
38863--38935
22
3.3
22
76
0
74
35
19
10
34
1.87
39013--39172
22
7.3
22
68
13
69
37
14
11
36
1.82
39054--39154
44
2.3
44
84
0
130
39
12
9
37
1.77
40117--40150
2
17.5
2
93
6
61
52
0
0
47
1.00
41867--41909
22
2.0
22
85
0
59
34
13
0
51
1.42
43194--43320
44
3.0
42
77
6
121
35
7
16
40
1.78
43216--43443
22
10.3
22
73
6
165
35
9
20
35
1.84
43570--43802
22
10.7
22
75
7
174
39
8
16
35
1.79
44204--44235
2
16.0
2
93
0
55
46
0
0
53
1.00
47079--47112
2
17.0
2
100
0
68
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48106--48207
31
3.3
31
83
0
114
20
21
24
33
1.97
50587--51209
22
28.4
22
69
12
264
34
16
11
37
1.84
52043--52141
31
3.2
31
81
5
92
42
16
6
35
1.73
53067--53107
21
2.0
20
85
4
55
51
0
12
36
1.40
54705--54822
42
2.8
42
79
3
130
49
6
5
38
1.54
54697--54822
43
3.0
42
78
13
136
50
6
5
37
1.51
58630--58764
65
2.1
65
98
0
261
25
16
20
37
1.93

Tables:   1

The End!