Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014708.1 Corchorus capsularis cultivar CVL-1 contig14729, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14887
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:4684 original size:27 final size:27

Alignment explanation


    Indices: 4648--4703  Score: 87
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       4638 GCACGATCAA

                        *               
       4648 CAGCACTTGA-GGAACCAGATTTTTGAG
          1 CAGCACTTGATGAAACC-GATTTTTGAG

                                       
       4675 CAGCACTTGATGAAACCGATTTTTGAG
          1 CAGCACTTGATGAAACCGATTTTTGAG

              
       4702 CA
          1 CA

       4704 ACATTAACTG


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  27   22  0.81
  28    5  0.19

ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27


Consensus pattern (27 bp):   
CAGCACTTGATGAAACCGATTTTTGAG

Found at i:14689 original size:30 final size:29

Alignment explanation


    Indices: 14627--14696  Score: 86
    Period size: 29  Copynumber: 2.4  Consensus size: 29

      14617 ACCGAACCGT

                                  ***    
      14627 CAAATAAGCCCCTGAACTATTATTTCGGC
          1 CAAATAAGCCCCTGAACTATTAAAACGGC

                              *       *   
      14656 CAAATAAGCCCCTGAACTCTTAAAAAGGGC
          1 CAAATAAGCCCCTGAACTATT-AAAACGGC

                       
      14686 CAAATAAGCCC
          1 CAAATAAGCCC

      14697 TGTTGCCAAG


Statistics
Matches: 35,  Mismatches: 5, Indels: 1
        0.85            0.12        0.02

Matches are distributed among these distances:
  29   20  0.57
  30   15  0.43

ACGTcount: A:0.37, C:0.29, G:0.14, T:0.20


Consensus pattern (29 bp):   
CAAATAAGCCCCTGAACTATTAAAACGGC
Done.