Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001471.1 Corchorus capsularis cultivar CVL-1 contig01471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6861
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:6844 original size:2 final size:2

Alignment explanation


    Indices: 6832--6861  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       6822 TCCACGCATA

                                                          
       6832 CT CT C- CT CT CT CT CT CT CT CT CT CT CT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   26  0.96

ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47


Consensus pattern (2 bp):   
CT

Done.