genome.fa.s14710.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014710.1 Corchorus capsularis cultivar CVL-1 contig14731, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16072

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2771--2889	47	2.5	47	94	2	204	27	18	32	21	1.96
3343--3379	15	2.3	15	90	9	56	81	0	18	0	0.70
3343--3379	17	2.2	16	95	4	65	81	0	18	0	0.70
3362--3406	13	3.6	12	77	11	54	77	2	20	0	0.87
4614--4845	107	2.2	107	80	5	254	17	18	28	35	1.93
5468--5493	13	2.0	13	100	0	52	30	15	15	38	1.88
8970--9074	26	4.0	26	81	4	122	55	8	20	16	1.67
9136--9474	22	15.4	22	68	20	113	55	4	20	19	1.61
9216--9240	12	2.1	12	100	0	50	52	0	32	16	1.44
9179--9286	45	2.4	46	77	10	123	57	2	23	16	1.52
9281--9349	35	2.0	35	85	0	93	52	7	20	20	1.70
9278--9575	166	1.8	165	86	5	440	54	5	19	21	1.65
9426--9504	35	2.2	37	90	6	135	51	5	20	22	1.66
9482--9682	22	9.4	22	70	13	98	53	3	21	21	1.62
9463--9640	21	8.2	22	74	11	136	51	3	22	21	1.64
9278--9619	166	2.1	166	84	7	437	53	5	20	21	1.65
9649--9718	7	10.0	7	74	11	54	61	2	20	15	1.46
9670--9718	15	3.4	14	75	13	55	63	2	20	14	1.40
9699--9750	22	2.4	22	80	6	61	46	5	23	25	1.74
9774--9860	26	3.2	26	66	20	70	49	6	18	25	1.72
9744--9957	55	3.9	55	90	2	313	48	7	19	24	1.75
9909--10131	71	3.2	70	83	6	263	47	8	18	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12041--12327	157	1.8	158	81	5	366	26	22	22	28	1.99
12221--12432	111	1.9	111	81	1	255	29	22	21	26	1.99
12879--13440	270	2.1	269	87	1	786	29	22	21	26	1.99
13574--13969	158	2.5	158	78	2	384	29	20	20	28	1.98
13890--14104	111	1.9	111	80	1	252	29	21	20	28	1.98
14012--14337	178	1.8	178	82	5	417	29	19	20	30	1.97
14003--14366	178	2.0	179	80	6	409	28	18	22	30	1.97
13581--14764	605	2.0	605	90	0	1859	28	20	21	29	1.98
14615--14973	157	2.3	157	80	6	395	29	21	20	28	1.98
14190--15479	427	3.0	426	91	0	2067	27	21	21	29	1.98
14956--16049	571	1.9	570	91	0	1810	28	20	21	28	1.98

Tables:   1

The End!