Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014717.1 Corchorus capsularis cultivar CVL-1 contig14738, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13196
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:3006 original size:25 final size:25

Alignment explanation


    Indices: 2971--3019  Score: 80
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2961 TCAATCAGCA

                                     
       2971 CTAGTGATCTAGTAGAAAAATGGTC
          1 CTAGTGATCTAGTAGAAAAATGGTC

                  *        *        
       2996 CTAGTGCTCTAGTAGGAAAATGGT
          1 CTAGTGATCTAGTAGAAAAATGGT

       3020 TCTTCATTCC


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.33, C:0.12, G:0.27, T:0.29


Consensus pattern (25 bp):   
CTAGTGATCTAGTAGAAAAATGGTC

Found at i:8313 original size:15 final size:15

Alignment explanation


    Indices: 8274--8313  Score: 62
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       8264 GAATGGCGCA

                  *        
       8274 AACAACAATGGTGCG
          1 AACAACCATGGTGCG

                           
       8289 AACAACCATGGTGCG
          1 AACAACCATGGTGCG

                 *    
       8304 AACAATCATG
          1 AACAACCATG

       8314 TTGTGCAGAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.40, C:0.23, G:0.23, T:0.15


Consensus pattern (15 bp):   
AACAACCATGGTGCG
Done.