Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014720.1 Corchorus capsularis cultivar CVL-1 contig14741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15391

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3455--3492
2
19.0
2
100
0
76
50
0
0
50
1.00
4422--4446
13
1.9
13
100
0
50
32
8
20
40
1.81
5475--5700
64
3.6
63
87
4
287
33
14
24
28
1.94
5754--6063
99
3.1
97
84
5
381
32
16
26
24
1.96
5754--6063
49
6.3
49
82
3
363
32
16
26
24
1.96
6091--6178
47
1.9
44
82
11
106
21
11
7
59
1.57
9270--9309
18
2.2
19
90
4
64
17
27
0
55
1.43
9694--9913
72
3.1
71
83
7
268
27
18
6
47
1.73
9883--9972
29
3.2
29
67
20
91
24
18
8
47
1.77
9879--10067
55
3.4
55
97
0
351
24
19
7
48
1.75
9857--10067
110
1.9
110
92
0
350
24
19
8
48
1.75
12011--12039
15
1.9
15
100
0
58
41
13
6
37
1.72
12130--12347
50
4.4
50
84
2
278
36
13
6
43
1.71
12149--12346
99
2.0
100
87
4
283
34
13
7
44
1.71
12846--12997
50
3.0
50
88
1
234
36
13
14
34
1.86
13281--13344
27
2.5
25
82
9
76
6
15
0
78
0.95
14471--14529
17
3.4
17
75
20
59
3
22
0
74
0.96
15133--15167
3
11.7
3
93
0
61
28
0
0
71
0.86

Tables:   1

The End!