Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014727.1 Corchorus capsularis cultivar CVL-1 contig14748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16785
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30


Found at i:8122 original size:33 final size:32

Alignment explanation


    Indices: 7988--8128  Score: 140
    Period size: 33  Copynumber: 4.3  Consensus size: 32

       7978 AAAGGATGAT

                    *        *         *     *
       7988 GTGGCCAGTTGTGGCCGAGCAT-TGCCGAGTCGT
          1 GTGGCC-GGTGTGGCCGGGCATGT-CCAAGTCGC

                                   *  *      
       8021 GTGGCCGGTTGTGGCCGGGCATGGCCGAGTCGC
          1 GTGGCCGG-TGTGGCCGGGCATGTCCAAGTCGC

                                       *     
       8054 GTGGCCGGTGGTGGCCGGGCATGTCCATGTCGC
          1 GTGGCCGGT-GTGGCCGGGCATGTCCAAGTCGC

                          *       *       *  
       8087 GTGGCCGGTGATGGTCGGGCATCTCCAAGTTGC
          1 GTGGCCGGTG-TGGCCGGGCATGTCCAAGTCGC

                     
       8120 GTGGCCGGT
          1 GTGGCCGGT

       8129 CACTGGTACT


Statistics
Matches: 93,  Mismatches: 11, Indels: 8
        0.83            0.10        0.07

Matches are distributed among these distances:
  32    3  0.03
  33   90  0.97

ACGTcount: A:0.09, C:0.26, G:0.44, T:0.22


Consensus pattern (32 bp):   
GTGGCCGGTGTGGCCGGGCATGTCCAAGTCGC
Done.