Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014728.1 Corchorus capsularis cultivar CVL-1 contig14749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38667

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
896--929
8
4.1
8
85
7
50
23
2
14
58
1.50
1825--1912
33
2.7
32
86
10
115
9
25
47
18
1.77
1825--1932
33
3.3
32
85
7
110
9
26
45
18
1.80
1912--1953
21
2.0
21
85
0
57
11
33
30
23
1.91
6809--6842
8
4.1
8
85
7
50
58
14
2
23
1.50
6916--6945
15
2.0
15
93
0
51
83
0
0
16
0.65
8498--8549
24
2.2
24
82
0
59
26
9
21
42
1.83
8569--8657
33
2.7
33
85
0
106
30
12
17
39
1.87
8567--8671
33
3.3
31
80
9
95
33
11
18
37
1.86
8594--8680
33
2.8
31
75
18
83
32
9
16
42
1.79
9061--9119
30
2.0
30
90
6
93
32
15
28
23
1.95
11501--11529
2
14.5
2
100
0
58
48
0
0
51
1.00
12755--12792
14
2.7
14
84
12
51
44
7
13
34
1.72
14619--14662
22
2.0
22
81
0
52
34
29
15
20
1.94
14660--14834
59
2.9
59
87
0
269
18
28
24
29
1.98
14906--15487
43
13.5
43
90
1
853
25
21
22
30
1.99
19404--19519
33
3.7
30
74
14
108
41
17
9
31
1.81
19500--19573
33
2.2
33
83
4
87
44
22
6
25
1.77
30268--30311
22
2.0
22
91
8
72
27
15
11
45
1.81
31867--31995
36
3.6
36
89
2
213
33
19
17
30
1.94
34213--34241
2
15.0
2
92
7
51
48
0
0
51
1.00
34212--34238
13
2.1
13
100
0
54
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38636--38665
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!