Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014731.1 Corchorus capsularis cultivar CVL-1 contig14752, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85781

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3064--3104
21
2.0
21
95
0
73
14
24
14
46
1.82
10320--10368
21
2.3
21
82
6
64
24
38
22
14
1.91
14308--14354
22
2.1
22
100
0
94
12
17
34
36
1.87
15505--15543
5
7.8
5
94
0
69
0
17
0
82
0.68
16214--16251
17
2.1
19
85
9
53
34
28
7
28
1.85
20150--20183
2
17.0
2
100
0
68
50
0
0
50
1.00
25818--25887
29
2.4
29
97
0
131
20
31
15
32
1.94
26150--26216
34
2.0
32
91
5
107
46
7
1
44
1.40
26153--26225
34
2.2
33
85
9
96
52
5
2
39
1.39
27854--27892
13
3.0
13
88
0
60
5
38
17
38
1.72
29306--29354
5
9.6
5
86
8
64
0
40
0
59
0.98
29312--29354
8
6.0
7
79
15
52
0
41
0
58
0.98
29722--29752
2
15.5
2
100
0
62
48
0
0
51
1.00
35324--35355
1
32.0
1
100
0
64
0
0
0
100
0.00
52941--52971
15
2.1
15
93
0
53
77
3
6
12
1.08
53381--54160
409
1.9
408
84
3
1039
32
13
12
41
1.82
56932--57251
121
2.6
120
85
4
426
41
11
8
37
1.72
57973--58378
120
3.3
121
87
3
609
39
14
7
38
1.75
69878--69942
33
2.0
33
100
0
130
18
12
23
46
1.82
71256--71288
2
16.5
2
93
0
57
48
0
3
48
1.17
72358--72385
2
14.0
2
100
0
56
50
0
0
50
1.00
72655--72692
11
3.5
11
85
10
51
57
2
0
39
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82544--82579
17
2.1
17
89
0
54
27
22
19
30
1.98

Tables:   1

The End!