Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014733.1 Corchorus capsularis cultivar CVL-1 contig14754, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7488
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:1716 original size:10 final size:10

Alignment explanation


    Indices: 1701--1725  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       1691 GAGGACTCTA

                      
       1701 GAATTTTCTG
          1 GAATTTTCTG

                      
       1711 GAATTTTCTG
          1 GAATTTTCTG

                 
       1721 GAATT
          1 GAATT

       1726 GAGCACGGAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48


Consensus pattern (10 bp):   
GAATTTTCTG
Done.