Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014734.1 Corchorus capsularis cultivar CVL-1 contig14755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32


Found at i:1121 original size:13 final size:13

Alignment explanation


    Indices: 1105--1129  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1095 CTAAAGTAAA

                         
       1105 TTAATAAAGCAAT
          1 TTAATAAAGCAAT

                        
       1118 TTAATAAAGCAA
          1 TTAATAAAGCAA

       1130 ACAATAATTA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28


Consensus pattern (13 bp):   
TTAATAAAGCAAT
Done.