genome.fa.s14738.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014738.1 Corchorus capsularis cultivar CVL-1 contig14759, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113093

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16721--16840	60	2.0	60	83	6	154	21	17	18	42	1.89
18008--18053	22	2.0	23	83	4	58	26	15	6	52	1.67
21084--21189	42	2.6	40	84	10	126	18	9	29	42	1.82
23067--23130	31	2.1	31	85	5	85	34	21	20	23	1.97
24463--24952	72	6.8	72	91	1	621	30	19	27	22	1.98
26220--26506	58	4.9	58	92	1	470	20	13	26	39	1.90
26223--26514	26	10.1	30	69	29	167	20	13	26	38	1.90
26196--26514	116	2.8	116	89	3	493	20	14	26	38	1.91
28375--28687	22	15.1	21	73	13	265	19	21	5	53	1.66
28375--28687	43	7.5	42	73	15	242	19	21	5	53	1.66
28389--28711	103	3.2	100	87	6	420	19	21	5	53	1.65
28506--28669	36	4.1	38	67	28	92	20	21	4	53	1.64
28584--28648	15	4.4	15	68	24	57	20	20	3	56	1.55
28710--28841	40	3.3	41	78	9	137	24	18	6	50	1.69
31836--31861	13	2.0	13	100	0	52	46	7	0	46	1.31
43569--43601	16	2.0	17	94	5	59	72	18	9	0	1.10
44788--44834	17	2.8	16	78	12	58	23	21	2	53	1.57
44814--45191	22	18.1	21	73	14	300	20	20	5	53	1.65
44814--45194	43	9.1	43	75	14	314	20	20	5	53	1.65
44814--45194	166	2.3	166	92	2	629	20	20	5	53	1.65
45182--45216	16	2.1	17	89	5	54	17	20	2	60	1.49
45089--45241	22	6.9	21	69	20	89	18	22	5	53	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45207--45345	40	3.4	41	79	12	144	23	20	6	48	1.72
46187--46215	2	14.5	2	100	0	58	48	0	0	51	1.00
50852--50965	39	2.8	41	80	6	126	21	11	27	40	1.87
60239--61062	54	15.2	54	86	3	1066	29	15	21	33	1.94
60239--61038	109	7.4	109	90	2	1128	30	15	21	32	1.94
60596--60686	25	3.2	29	62	13	73	26	18	21	32	1.97
61073--61219	39	3.7	40	81	7	133	25	19	25	29	1.98
61158--61563	35	11.4	35	85	5	478	26	15	25	32	1.95
61528--62445	89	10.2	90	84	5	892	27	15	25	32	1.96
61528--62445	270	3.4	271	81	6	1014	27	15	25	32	1.96
63034--63062	5	5.8	5	100	0	58	17	0	0	82	0.66
64939--64979	17	2.4	18	84	8	59	21	2	4	70	1.18
67528--68245	67	10.8	67	89	2	1022	21	18	17	42	1.89
77294--77329	15	2.4	15	90	0	54	33	19	13	33	1.91
82299--82423	49	2.6	49	81	9	150	33	15	5	45	1.69
82963--83009	18	2.6	18	89	0	67	25	44	21	8	1.80
84114--84205	15	6.1	15	78	5	96	40	23	25	10	1.87
86818--86913	49	2.0	49	85	0	129	29	20	5	44	1.73
93045--93189	18	8.1	18	82	3	157	13	20	40	25	1.89
98396--98443	11	4.8	10	82	17	55	41	0	20	37	1.53
98408--98446	18	2.1	19	90	4	62	43	0	20	35	1.52
98397--98456	30	2.0	30	81	12	70	43	1	18	36	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99765--99795	6	5.3	6	96	3	55	35	0	12	51	1.40
100103--100162	16	3.6	16	81	6	57	53	5	15	26	1.62
100098--100145	18	2.7	18	80	6	62	58	6	12	22	1.57
100180--100213	17	2.0	17	88	0	50	52	5	2	38	1.41
101127--101167	15	2.7	15	96	0	73	43	21	26	7	1.79
105346--105376	6	5.3	6	96	3	55	35	0	12	51	1.40
106289--106344	15	3.7	15	85	9	69	12	0	73	14	1.11
106929--106962	17	2.0	17	88	0	50	14	61	2	20	1.46
111764--111804	21	2.0	21	85	9	57	48	19	9	21	1.77

Tables:   1

The End!