genome.fa.s14750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014750.1 Corchorus capsularis cultivar CVL-1 contig14771, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97547

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6585--6666	39	2.1	39	83	0	101	23	9	37	29	1.87
11290--11401	54	2.1	54	98	0	215	24	14	31	30	1.94
22483--22510	14	2.0	14	100	0	56	7	92	0	0	0.37
24922--24950	5	5.8	5	100	0	58	20	20	0	58	1.39
26316--26605	100	2.9	100	93	0	492	33	14	13	38	1.85
38531--38560	4	7.5	4	100	0	60	26	0	23	50	1.50
41071--41109	2	19.5	2	100	0	78	0	0	48	51	1.00
41109--41139	2	15.5	2	100	0	62	48	0	0	51	1.00
43394--43434	20	2.1	19	86	13	57	31	4	4	58	1.40
44001--44048	24	2.0	24	83	4	60	47	18	6	27	1.72
53069--53172	52	2.0	52	98	0	199	38	7	20	33	1.81
53252--53431	90	2.0	90	98	0	351	25	23	15	36	1.94
54489--54517	14	2.1	14	100	0	58	51	6	6	34	1.55
72045--72083	15	2.6	15	83	0	51	53	7	33	5	1.51
72058--72087	15	1.9	15	93	6	51	50	10	33	6	1.62
72401--72472	30	2.3	33	85	7	96	23	15	13	47	1.81
72401--72481	33	2.6	30	84	7	99	20	13	16	49	1.79
72940--72982	16	2.8	15	82	3	50	6	37	0	55	1.27
72924--72974	27	1.9	26	84	4	66	5	39	0	54	1.24
72918--72981	31	2.0	32	84	3	85	7	39	0	53	1.30
76031--76348	22	14.3	22	68	18	103	41	10	14	34	1.79
76248--76393	44	3.3	44	83	3	134	43	10	14	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81192--81294	53	1.9	53	88	0	152	17	20	26	35	1.94
81579--81630	24	2.1	24	83	16	63	13	1	15	69	1.28
87798--87836	14	2.7	14	92	4	60	46	0	53	0	1.00
92580--92668	45	2.0	45	95	0	160	34	16	25	22	1.95

Tables:   1

The End!