Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014752.1 Corchorus capsularis cultivar CVL-1 contig14773, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3139
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31


Found at i:2928 original size:8 final size:8

Alignment explanation


    Indices: 2915--2939  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

       2905 CCACTTTTCC

                    
       2915 AAAAATTG
          1 AAAAATTG

                    
       2923 AAAAATTG
          1 AAAAATTG

                    
       2931 AAAAATTG
          1 AAAAATTG

             
       2939 A
          1 A

       2940 TGGATTTGAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24


Consensus pattern (8 bp):   
AAAAATTG
Done.