genome.fa.s14754.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014754.1 Corchorus capsularis cultivar CVL-1 contig14775, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67627

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18--246	22	10.4	22	75	11	157	42	9	14	33	1.78
215--280	34	1.9	34	93	0	114	46	10	9	33	1.70
191--304	56	2.0	56	100	0	228	47	8	10	33	1.69
249--302	22	2.5	22	93	0	90	44	9	11	35	1.72
174--324	78	1.9	78	82	5	189	45	9	11	33	1.73
428--921	22	22.6	22	68	13	128	39	9	13	36	1.78
428--656	44	5.3	45	73	16	164	40	9	13	36	1.77
3235--3286	2	27.0	2	84	7	72	46	0	1	51	1.12
3316--3359	12	3.9	12	82	14	58	36	13	0	50	1.42
3447--3679	70	3.2	70	83	10	288	36	13	0	48	1.48
3447--3685	78	3.2	77	90	7	350	36	12	0	49	1.47
7830--8425	298	2.0	298	97	0	1138	21	22	13	42	1.88
15135--15334	35	5.7	36	88	2	230	39	18	7	36	1.77
15135--15383	70	3.7	70	85	4	298	38	18	7	35	1.78
15137--15350	105	2.0	105	88	0	320	38	18	7	35	1.78
15173--15383	35	6.3	35	83	10	260	39	18	7	34	1.79
15318--15373	27	2.1	27	100	0	112	42	17	10	28	1.83
15365--15404	21	1.9	21	85	10	55	42	15	0	42	1.46
15386--15460	35	2.1	35	90	0	114	37	18	8	36	1.80
16609--16679	35	2.0	35	100	0	142	30	35	11	22	1.89
18680--18755	40	1.9	40	97	0	143	36	18	14	30	1.91
18921--18963	23	1.9	23	95	4	79	44	13	16	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19887--19932	20	2.2	22	84	7	60	19	6	8	65	1.43
26205--26252	22	2.1	23	84	3	62	64	8	4	22	1.38
27195--27228	17	2.0	17	100	0	68	35	29	23	11	1.90
27652--27676	12	2.1	12	100	0	50	28	16	8	48	1.74
58065--58109	22	2.0	22	86	0	63	20	24	31	24	1.98
61633--61665	12	2.8	12	95	0	57	36	30	3	30	1.73
65803--65844	13	3.3	13	87	12	61	33	0	7	59	1.25
66754--66975	33	6.6	33	74	8	169	32	18	14	34	1.91
66754--66975	101	2.2	102	86	2	304	32	18	14	34	1.91
66882--67050	36	4.7	35	76	9	164	33	14	11	41	1.81
66851--66999	69	2.2	70	90	4	232	33	16	12	38	1.85
66868--67014	69	2.1	69	88	2	215	34	14	10	40	1.82

Tables:   1

The End!