genome.fa.s14755.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014755.1 Corchorus capsularis cultivar CVL-1 contig14776, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26305

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893--962	26	2.6	27	80	8	72	21	18	20	40	1.92
1338--1384	17	2.7	18	78	21	64	27	19	0	53	1.45
2987--3023	16	2.3	16	90	0	56	18	18	16	45	1.85
4719--4915	107	1.8	107	95	0	358	42	9	8	40	1.66
4719--4947	107	2.1	107	88	3	345	42	10	7	40	1.67
5428--5477	25	2.0	25	96	0	91	40	16	2	42	1.59
6053--6093	16	2.7	15	85	7	55	56	7	0	36	1.27
8582--8690	25	4.0	27	73	16	73	18	22	3	55	1.59
8618--8729	27	4.2	26	78	13	102	16	20	5	58	1.57
8584--8712	52	2.3	57	82	11	144	18	21	4	55	1.61
8618--8729	29	4.2	26	79	13	111	16	20	5	58	1.57
8766--8891	7	17.6	7	67	14	60	23	20	2	53	1.58
8748--8919	36	4.8	36	81	5	206	21	20	4	54	1.61
8987--9049	7	9.0	7	81	6	74	15	17	1	65	1.36
8952--9066	22	5.4	21	71	17	94	18	20	2	59	1.50
8858--9066	42	4.7	43	74	15	183	20	20	3	55	1.59
9070--9124	27	2.0	27	85	0	74	30	20	3	45	1.68
13920--14044	49	2.6	49	85	0	160	51	8	16	24	1.71
14168--14245	40	1.9	40	86	5	111	47	6	21	24	1.74
14301--14529	36	6.4	36	89	2	336	46	12	13	27	1.78
14306--14512	71	2.9	70	92	4	342	47	11	12	28	1.76
14306--14571	107	2.5	107	86	4	356	46	12	13	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14301--14568	36	7.4	36	86	4	274	46	12	14	27	1.80
14586--14738	11	13.7	11	82	13	188	56	9	23	9	1.61
14586--14738	23	6.9	23	83	10	178	56	9	23	9	1.61
14586--14738	34	4.6	33	82	11	170	56	9	23	9	1.61
14731--14974	36	6.9	35	79	10	232	43	9	22	24	1.83
14731--14975	71	3.5	69	84	10	320	43	9	22	24	1.83
14727--14963	104	2.2	104	83	8	275	43	10	22	24	1.84
14731--14994	140	1.9	138	85	6	363	43	10	21	24	1.84
15003--15115	32	3.4	32	77	13	120	47	5	16	30	1.69
15013--15131	36	3.4	34	77	15	129	47	6	15	29	1.71
15003--15131	68	1.9	68	87	6	190	48	6	15	29	1.69
18169--18287	44	2.8	42	88	5	179	44	8	15	31	1.77
18225--18287	20	3.2	20	66	8	56	49	7	17	25	1.74
20219--20312	37	2.4	36	80	15	100	32	15	26	24	1.96
20473--21009	195	2.8	196	97	1	1008	36	11	22	28	1.90
21321--21537	50	4.3	50	89	0	317	36	11	27	23	1.90
21355--21438	27	3.3	27	65	19	79	32	13	32	22	1.92
21506--21620	52	2.2	52	84	3	142	31	13	29	26	1.93
21839--21909	26	2.7	27	80	8	74	19	16	23	39	1.92
22936--23010	16	4.8	16	78	3	80	40	37	13	9	1.77
22936--23010	31	2.4	31	82	6	89	40	37	13	9	1.77
23806--23840	2	17.5	2	88	11	54	48	2	0	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24019--24063	2	23.0	2	86	13	67	46	0	2	51	1.13
24531--24569	18	2.1	18	85	9	51	56	33	5	5	1.43

Tables:   1

The End!