Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014758.1 Corchorus capsularis cultivar CVL-1 contig14779, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52026

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
356--392
2
18.5
2
89
10
58
48
2
0
48
1.15
356--392
19
2.1
19
90
10
60
48
2
0
48
1.15
2910--2935
2
13.0
2
100
0
52
50
0
0
50
1.00
8153--8289
16
8.6
16
67
18
70
30
35
22
10
1.89
8153--8269
32
3.7
31
82
4
135
28
35
23
11
1.91
8154--8289
32
4.2
32
74
5
87
30
36
22
11
1.89
9116--9266
16
9.5
16
75
8
130
33
33
22
11
1.90
9122--9169
25
1.9
25
84
16
64
29
37
27
6
1.81
9116--9266
32
4.8
32
78
4
146
33
33
22
11
1.90
9891--9952
30
2.1
30
81
3
72
38
11
3
46
1.56
10402--10484
42
2.0
43
90
7
134
22
16
24
36
1.95
10472--10514
20
2.1
21
86
4
61
39
20
18
20
1.93
10655--10682
14
2.0
14
100
0
56
50
0
0
50
1.00
15615--15879
139
1.9
139
99
0
521
26
29
9
34
1.88
20083--20107
2
12.5
2
100
0
50
52
0
0
48
1.00
20298--20365
34
2.0
35
86
13
97
13
17
1
67
1.30
35583--35608
2
13.0
2
100
0
52
50
0
0
50
1.00
42535--42567
6
5.7
6
89
7
50
0
9
3
87
0.63
42535--42567
17
1.9
17
93
0
57
0
9
3
87
0.63
43934--43965
15
2.1
15
100
0
64
28
12
25
34
1.92
45161--45188
2
14.0
2
100
0
56
50
0
0
50
1.00
47127--47243
60
2.0
60
88
5
175
30
17
14
37
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47127--47286
60
2.7
60
80
6
157
32
16
11
38
1.86
51996--52026
1
31.0
1
100
0
62
0
0
0
100
0.00

Tables:   1

The End!