Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001476.1 Corchorus capsularis cultivar CVL-1 contig01476, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1156
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26


Found at i:636 original size:27 final size:26

Alignment explanation


    Indices: 602--652  Score: 68
    Period size: 27  Copynumber: 1.9  Consensus size: 26

        592 ATCTCGTCGT

                                       
        602 TAATTTAATATTAATACA-ACAATAGC
          1 TAATTTAATATTAATA-ATACAATAGC

                      *              
        628 TAATATTAATTTTAATAATACAATA
          1 TAAT-TTAATATTAATAATACAATA

        653 AAAAAATCTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  26    5  0.23
  27   17  0.77

ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39


Consensus pattern (26 bp):   
TAATTTAATATTAATAATACAATAGC
Done.