Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014773.1 Corchorus capsularis cultivar CVL-1 contig14794, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24472

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3314--3343
13
2.3
13
94
0
51
0
10
0
90
0.47
3314--3343
15
1.9
15
93
6
51
0
10
0
90
0.47
8172--8245
21
3.5
21
66
14
53
27
33
6
32
1.83
8662--8723
12
5.4
12
83
11
67
38
29
3
29
1.73
8686--8732
9
4.9
9
79
20
51
40
25
2
31
1.68
8662--8733
21
3.3
21
86
5
90
38
29
2
29
1.71
8672--8734
12
5.8
12
68
24
50
39
26
3
30
1.72
12988--13019
15
2.1
15
100
0
64
25
6
12
56
1.59
14473--14503
1
31.0
1
100
0
62
0
0
0
100
0.00
20121--20247
64
2.0
64
100
0
254
29
8
14
47
1.74
20937--20965
14
2.1
14
100
0
58
34
27
17
20
1.95

Tables:   1

The End!