Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014777.1 Corchorus capsularis cultivar CVL-1 contig14798, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141080

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3254--3288
9
4.0
9
92
3
54
5
22
0
71
1.07
3256--3289
13
2.6
14
90
9
54
2
20
0
76
0.92
3776--3811
11
3.3
11
96
0
63
38
8
5
47
1.57
3989--4028
13
3.1
13
82
13
55
42
5
5
47
1.47
4216--4265
24
2.1
24
96
0
91
44
4
6
46
1.47
4227--4265
13
3.2
13
78
14
55
43
2
7
46
1.46
4216--4260
11
3.9
11
80
11
54
42
4
6
46
1.50
3787--4405
225
2.7
226
96
0
1141
39
7
20
32
1.81
9558--9588
2
15.5
2
100
0
62
48
0
0
51
1.00
17646--18055
156
2.6
156
77
8
415
33
21
15
29
1.94
19880--19948
25
2.7
27
76
13
74
1
17
1
79
0.88
21123--21235
57
2.1
53
93
6
190
35
12
8
43
1.74
31425--31452
13
2.2
13
100
0
56
28
14
17
39
1.89
37773--37815
20
2.2
20
86
0
59
30
18
18
32
1.95
61619--61777
63
2.8
55
88
11
218
40
9
6
43
1.64
61702--61777
23
3.0
24
68
17
73
38
7
7
46
1.62
61686--61768
28
3.1
28
70
16
95
34
10
7
46
1.66
61771--61829
31
2.0
28
83
12
73
44
13
10
32
1.77
61777--61964
104
1.8
104
97
0
358
39
14
17
28
1.89
61937--61991
27
2.0
27
92
0
92
41
16
21
20
1.90
75845--75960
58
2.0
58
89
0
178
35
15
13
35
1.87
92897--92934
5
7.6
5
96
0
67
57
21
21
0
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94710--94768
29
2.0
29
90
0
91
33
8
38
18
1.81
102320--102347
2
14.0
2
100
0
56
50
0
0
50
1.00
102922--102959
4
9.8
4
94
5
69
21
0
0
78
0.74
102926--102971
10
4.3
11
89
10
69
17
0
0
82
0.67
102920--102972
11
4.7
12
81
13
60
18
0
0
81
0.70
104251--104364
12
9.5
12
72
10
90
31
26
23
18
1.97
105604--105688
40
2.1
40
93
4
145
14
7
21
57
1.60
106701--106747
2
25.0
2
83
12
64
48
0
2
48
1.13
106795--106898
54
1.9
55
84
5
140
43
22
9
25
1.83
125012--125129
39
3.0
39
100
0
236
38
17
15
28
1.90
126345--126397
21
2.6
21
85
5
74
20
3
24
50
1.64
134435--134504
34
2.1
34
94
0
122
12
34
37
15
1.86
134910--134947
20
1.9
20
89
10
60
31
5
39
23
1.77
135886--135922
2
18.5
2
100
0
74
48
0
0
51
1.00
137248--137359
32
3.5
32
78
11
115
29
35
23
11
1.90
137258--137359
16
6.4
16
76
13
102
29
36
21
12
1.91
137265--137342
39
2.0
38
80
9
86
28
37
21
12
1.90
137248--137359
48
2.3
48
78
6
120
29
35
23
11
1.90
137288--137357
23
2.9
23
72
21
63
27
37
22
12
1.91
138196--138252
16
3.6
16
80
4
71
29
35
24
10
1.89
138196--138265
32
2.2
31
87
7
97
30
35
24
10
1.88

Tables:   1

The End!