genome.fa.s14779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014779.1 Corchorus capsularis cultivar CVL-1 contig14800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23742

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2779--2822	20	2.2	20	100	0	88	18	9	20	52	1.72
7129--7169	15	2.7	15	82	17	57	21	4	0	73	1.02
16229--16289	31	1.9	32	83	6	79	32	14	3	49	1.60
16482--16519	19	2.0	20	85	15	53	28	5	2	63	1.30
16685--16868	22	8.3	22	75	11	151	33	9	18	39	1.83
16904--17295	44	8.8	44	67	16	134	39	9	16	34	1.82
16933--17043	22	5.1	22	71	17	63	37	8	17	36	1.79
17088--17320	22	10.5	23	72	12	107	41	10	15	33	1.80
17102--17165	21	2.8	22	83	11	76	42	10	12	34	1.78
17437--17847	22	18.5	22	68	16	124	41	10	15	32	1.81
17438--17595	66	2.4	65	81	9	162	43	9	15	31	1.79
17400--18223	44	19.1	44	67	14	257	39	9	15	34	1.80
17794--17869	22	3.5	22	81	3	82	46	9	11	32	1.72
17947--17985	20	2.0	20	100	0	78	41	10	23	25	1.86
18018--18075	22	2.6	22	100	0	116	43	13	10	32	1.78
17968--18389	22	19.3	22	68	18	99	38	9	15	36	1.81
18062--18176	60	1.9	61	87	5	171	41	7	15	34	1.76
18120--18221	23	4.5	23	80	4	93	40	6	12	40	1.70
16991--18223	552	2.2	544	91	5	1811	39	9	16	34	1.81
18272--18336	23	2.9	22	81	2	67	32	12	16	38	1.86
18362--18409	22	2.2	22	85	3	62	54	4	14	27	1.59
20747--20847	48	2.1	48	98	0	193	25	14	24	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20944--20975	15	2.1	15	100	0	64	25	12	18	43	1.85
21240--21290	25	2.0	25	92	7	86	17	13	13	54	1.70
22946--23019	32	2.3	32	88	0	112	12	10	41	35	1.77
22946--23030	32	2.7	32	82	10	111	10	10	41	37	1.74
23184--23269	16	5.4	15	75	8	73	9	12	24	53	1.68
23183--23269	32	2.7	32	92	3	140	9	12	24	54	1.67
23168--23290	32	3.8	31	82	7	138	9	12	26	52	1.69

Tables:   1

The End!