Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014781.1 Corchorus capsularis cultivar CVL-1 contig14802, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80146

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
48
0
0
51
1.00
7770--7844
33
2.3
33
86
4
98
14
36
40
9
1.78
8302--8333
15
2.1
15
94
0
55
62
21
12
3
1.43
9249--9358
33
3.3
33
96
2
195
10
33
40
14
1.81
42535--42745
113
1.9
113
83
4
273
38
15
7
39
1.74
57958--57992
2
17.0
2
94
5
61
48
2
0
48
1.16
58183--58278
22
4.7
22
69
21
91
26
2
20
51
1.59
58161--58278
59
2.0
59
98
0
227
25
4
18
51
1.64
60371--60413
19
2.2
19
83
4
50
65
2
23
9
1.34
61655--61755
53
1.9
53
88
6
152
39
16
7
35
1.78
62702--62737
13
2.8
13
91
4
56
44
5
0
50
1.25
72629--72793
31
5.5
31
71
16
148
32
21
20
26
1.97
72633--72793
60
2.7
60
93
0
259
33
21
19
25
1.97
72827--73022
31
6.5
30
68
16
127
27
20
17
35
1.95
72856--73017
60
2.7
60
86
1
227
27
20
17
35
1.95
75299--75339
21
2.0
21
95
0
73
43
9
14
31
1.78
79936--79978
21
2.0
21
95
0
77
44
9
16
30
1.79
80062--80096
17
2.1
17
94
0
61
28
20
17
34
1.95

Tables:   1

The End!