Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014793.1 Corchorus capsularis cultivar CVL-1 contig14814, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1625
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36


Found at i:697 original size:6 final size:6

Alignment explanation


    Indices: 689--718  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        679 CATTACATGC

                 *                            
        689 ATTTGC ATTTGT ATTTGT ATTTGT ATTTGT
          1 ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT

        719 TCTATTCGGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.17, C:0.03, G:0.17, T:0.63


Consensus pattern (6 bp):   
ATTTGT

Done.