Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014795.1 Corchorus capsularis cultivar CVL-1 contig14816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26337

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2929--3001
27
2.7
27
86
0
92
20
17
5
56
1.61
2991--3030
21
1.9
21
84
0
53
27
22
0
50
1.50
3013--3313
7
41.7
7
65
16
98
19
22
3
54
1.59
2992--3333
36
9.5
36
86
3
465
19
23
2
54
1.58
3149--3263
29
3.7
29
72
11
70
19
22
3
54
1.59
3204--3248
15
3.1
15
71
28
51
20
22
2
55
1.54
3214--3313
44
2.3
43
78
1
110
20
21
4
55
1.60
3357--3445
40
2.2
40
84
7
110
20
23
5
50
1.69
3486--3687
32
6.6
32
74
15
185
20
23
4
51
1.66
3529--3692
65
2.5
64
83
6
190
20
22
4
53
1.63
8447--8625
70
2.6
70
86
3
243
31
17
25
25
1.97
16669--16731
31
2.0
33
84
6
85
36
15
34
12
1.86
17759--17805
24
2.0
23
84
12
60
14
12
4
68
1.36
21103--21153
7
7.3
7
81
14
61
0
15
0
84
0.63
21114--21157
22
2.0
21
91
4
70
0
18
0
81
0.68
21812--21865
14
3.8
14
80
7
56
35
11
7
46
1.67

Tables:   1

The End!