Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014805.1 Corchorus capsularis cultivar CVL-1 contig14826, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7552
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:2460 original size:30 final size:30

Alignment explanation


    Indices: 2412--2476  Score: 94
    Period size: 30  Copynumber: 2.2  Consensus size: 30

       2402 CCATCGCTTG

                  * *                     
       2412 GGCCATTGGATGGAGCAACCGGCCACAACC
          1 GGCCATCGCATGGAGCAACCGGCCACAACC

                         *           *    
       2442 GGCCATCGCATGGGGCAACCGGCCATAACC
          1 GGCCATCGCATGGAGCAACCGGCCACAACC

                 
       2472 GGCCA
          1 GGCCA

       2477 ATGGATCCTT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.25, C:0.35, G:0.31, T:0.09


Consensus pattern (30 bp):   
GGCCATCGCATGGAGCAACCGGCCACAACC

Found at i:4447 original size:21 final size:21

Alignment explanation


    Indices: 4421--4470  Score: 55
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       4411 TCCAGCTAGG

                                 
       4421 CACCCAGGCCAAAAGCCTGAA
          1 CACCCAGGCCAAAAGCCTGAA

                  **   * *      *
       4442 CACCCAACCCATAGGCCTGAG
          1 CACCCAGGCCAAAAGCCTGAA

                    
       4463 CACCCAGG
          1 CACCCAGG

       4471 TACTAAGCAC


Statistics
Matches: 22,  Mismatches: 7, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.32, C:0.42, G:0.20, T:0.06


Consensus pattern (21 bp):   
CACCCAGGCCAAAAGCCTGAA
Done.